HL_9BH5_078

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUUGACUC

Length

8 nucleotides

Bulged bases

9BH5|1|B2|U|233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_078 not in the Motif Atlas

Homologous match to HL_8C3A_197

Geometric discrepancy: 0.3053

The information below is about HL_8C3A_197

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9BH5|1|B2|G|227
9BH5|1|B2|U|228
9BH5|1|B2|U|229
9BH5|1|B2|G|230
9BH5|1|B2|A|231
9BH5|1|B2|C|232
9BH5|1|B2|U|233
9BH5|1|B2|C|234

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AE

Small ribosomal subunit protein eS4

Chain AG

Small ribosomal subunit protein eS6

Chain AL

Small ribosomal subunit protein uS17