HL_9BH5_088
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_088 not in the Motif Atlas
- Homologous match to HL_8C3A_211
- Geometric discrepancy: 0.1055
- The information below is about HL_8C3A_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9BH5|1|B2|A|865
9BH5|1|B2|G|866
9BH5|1|B2|G|867
9BH5|1|B2|U|868
9BH5|1|B2|G|869
9BH5|1|B2|A|870
9BH5|1|B2|A|871
9BH5|1|B2|A|872
9BH5|1|B2|U|873
9BH5|1|B2|U|874
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AF
- Small ribosomal subunit protein uS7
- Chain AO
- Small ribosomal subunit protein uS11
- Chain DC
- mRNA
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