HL_9BUP_007

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGAAAGGC

Length

9 nucleotides

Bulged bases

9BUP|1|AA|G|226, 9BUP|1|AA|A|227, 9BUP|1|AA|A|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_007 not in the Motif Atlas

Homologous match to HL_8CRE_007

Geometric discrepancy: 0.1771

The information below is about HL_8CRE_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9BUP|1|AA|G|224
9BUP|1|AA|U|225
9BUP|1|AA|G|226
9BUP|1|AA|A|227
9BUP|1|AA|A|228
9BUP|1|AA|A|229
9BUP|1|AA|G|230
9BUP|1|AA|G|231
9BUP|1|AA|C|232

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AF

60S ribosomal protein L4

Chain AZ

60S ribosomal protein L26