HL_9BUP_016
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAUUCUUUAAAC
- Length
- 12 nucleotides
- Bulged bases
- 9BUP|1|AA|U|766, 9BUP|1|AA|A|772
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_016 not in the Motif Atlas
- Homologous match to HL_8P9A_127
- Geometric discrepancy: 0.5311
- The information below is about HL_8P9A_127
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_18470.2
- Basepair signature
- cWW-cWS-tSH-cWS-F
- Number of instances in this motif group
- 7
Unit IDs
9BUP|1|AA|G|764
9BUP|1|AA|A|765
9BUP|1|AA|U|766
9BUP|1|AA|U|767
9BUP|1|AA|C|768
9BUP|1|AA|U|769
9BUP|1|AA|U|770
9BUP|1|AA|U|771
9BUP|1|AA|A|772
9BUP|1|AA|A|773
9BUP|1|AA|A|774
9BUP|1|AA|C|775
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AF
- 60S ribosomal protein L4
- Chain AL
- 60S ribosomal protein L13
- Chain AP
- Ribosomal protein L15
- Chain AZ
- 60S ribosomal protein L26
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