HL_9BUP_021

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCUCAG

Length

6 nucleotides

Bulged bases

9BUP|1|AA|C|1078, 9BUP|1|AA|A|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_021 not in the Motif Atlas

Homologous match to HL_8P9A_134

Geometric discrepancy: 0.1491

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

9BUP|1|AA|U|1077
9BUP|1|AA|C|1078
9BUP|1|AA|U|1079
9BUP|1|AA|C|1080
9BUP|1|AA|A|1081
9BUP|1|AA|G|1082

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein L29

Chain AO

60S ribosomal protein L27a

Chain Ai

Large ribosomal subunit protein eL42