HL_9BUP_031

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUUUCUUU

Length

9 nucleotides

Bulged bases

9BUP|1|AA|U|1842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_031 not in the Motif Atlas

Homologous match to HL_8CRE_036

Geometric discrepancy: 0.1073

The information below is about HL_8CRE_036

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9BUP|1|AA|G|1835
9BUP|1|AA|U|1836
9BUP|1|AA|U|1837
9BUP|1|AA|U|1838
9BUP|1|AA|U|1839
9BUP|1|AA|C|1840
9BUP|1|AA|U|1841
9BUP|1|AA|U|1842
9BUP|1|AA|U|1843

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L19

Chain AX

60S ribosomal protein L22