HL_9BUP_038
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9BUP|1|AA|A|2431, 9BUP|1|AA|A|2432, 9BUP|1|AA|U|2433, 9BUP|1|AA|A|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_038 not in the Motif Atlas
- Homologous match to HL_8P9A_157
- Geometric discrepancy: 0.115
- The information below is about HL_8P9A_157
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9BUP|1|AA|U|2428
9BUP|1|AA|U|2429
9BUP|1|AA|U|2430
9BUP|1|AA|A|2431
9BUP|1|AA|A|2432
9BUP|1|AA|U|2433
9BUP|1|AA|U|2434
9BUP|1|AA|A|2435
9BUP|1|AA|A|2436
9BUP|1|AA|A|2437
9BUP|1|AA|A|2438
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AD
- 60S ribosomal protein L2
- Chain Ac
- Ribosomal protein L37
- Chain Sa
- nascent polypeptide chain
Coloring options: