HL_9BUP_052

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGCAGAAG

Length

8 nucleotides

Bulged bases

9BUP|1|AA|G|3257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_052 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.1002

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9BUP|1|AA|C|3256
9BUP|1|AA|G|3257
9BUP|1|AA|C|3258
9BUP|1|AA|A|3259
9BUP|1|AA|G|3260
9BUP|1|AA|A|3261
9BUP|1|AA|A|3262
9BUP|1|AA|G|3263

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L6

Chain Af

Ubiquitin-60S ribosomal protein L40