HL_9BUP_071
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 9BUP|1|S9|U|16, 9BUP|1|S9|C|17, 9BUP|1|S9|G|18, 9BUP|1|S9|G|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_071 not in the Motif Atlas
- Geometric match to HL_1N78_001
- Geometric discrepancy: 0.3517
- The information below is about HL_1N78_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78347.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9BUP|1|S9|C|13
9BUP|1|S9|A|14
9BUP|1|S9|G|15
9BUP|1|S9|U|16
9BUP|1|S9|C|17
9BUP|1|S9|G|18
9BUP|1|S9|G|19
9BUP|1|S9|U|20
9BUP|1|S9|A|21
9BUP|1|S9|G|22
Current chains
- Chain S9
- tRNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AQ
- 60S ribosomal protein L10
- Chain S8
- Transfer RNA; tRNA
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