HL_9BUP_077
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGUAUUGGC
- Length
- 9 nucleotides
- Bulged bases
- 9BUP|1|SA|G|343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_077 not in the Motif Atlas
- Homologous match to HL_8CRE_198
- Geometric discrepancy: 0.1028
- The information below is about HL_8CRE_198
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87268.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
9BUP|1|SA|G|336
9BUP|1|SA|G|337
9BUP|1|SA|U|338
9BUP|1|SA|A|339
9BUP|1|SA|U|340
9BUP|1|SA|U|341
9BUP|1|SA|G|342
9BUP|1|SA|G|343
9BUP|1|SA|C|344
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SL
- 40S ribosomal protein S8
- Chain SV
- 40S ribosomal protein S11
Coloring options: