3D structure

PDB id
9BUP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GGUAUUGGC
Length
9 nucleotides
Bulged bases
9BUP|1|SA|G|343
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9BUP_077 not in the Motif Atlas
Homologous match to HL_8CRE_198
Geometric discrepancy: 0.1028
The information below is about HL_8CRE_198
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_87268.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
16

Unit IDs

9BUP|1|SA|G|336
9BUP|1|SA|G|337
9BUP|1|SA|U|338
9BUP|1|SA|A|339
9BUP|1|SA|U|340
9BUP|1|SA|U|341
9BUP|1|SA|G|342
9BUP|1|SA|G|343
9BUP|1|SA|C|344

Current chains

Chain SA
18S ribosomal RNA

Nearby chains

Chain SL
40S ribosomal protein S8
Chain SV
40S ribosomal protein S11

Coloring options:


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