HL_9BUP_079
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCUGAGAAAUAG
- Length
- 12 nucleotides
- Bulged bases
- 9BUP|1|SA|U|408, 9BUP|1|SA|A|409
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_079 not in the Motif Atlas
- Homologous match to HL_8P9A_199
- Geometric discrepancy: 0.0992
- The information below is about HL_8P9A_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9BUP|1|SA|C|399
9BUP|1|SA|C|400
9BUP|1|SA|U|401
9BUP|1|SA|G|402
9BUP|1|SA|A|403
9BUP|1|SA|G|404
9BUP|1|SA|A|405
9BUP|1|SA|A|406
9BUP|1|SA|A|407
9BUP|1|SA|U|408
9BUP|1|SA|A|409
9BUP|1|SA|G|410
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SF
- 40S ribosomal protein S4
- Chain SH
- 40S ribosomal protein S6
- Chain SL
- 40S ribosomal protein S8
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