HL_9BUP_094
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 9BUP|1|SA|U|1854, 9BUP|1|SA|U|1855, 9BUP|1|SA|A|1856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_094 not in the Motif Atlas
- Homologous match to HL_8CRE_223
- Geometric discrepancy: 0.3206
- The information below is about HL_8CRE_223
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9BUP|1|SA|A|1847
9BUP|1|SA|U|1848
9BUP|1|SA|U|1849
9BUP|1|SA|G|1850
9BUP|1|SA|C|1851
9BUP|1|SA|A|1852
9BUP|1|SA|A|1853
9BUP|1|SA|U|1854
9BUP|1|SA|U|1855
9BUP|1|SA|A|1856
9BUP|1|SA|U|1857
9BUP|1|SA|U|1858
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SS
- 40S ribosomal protein S18
- Chain ST
- 40S ribosomal protein S29
- Chain SX
- 40S ribosomal protein S19
- Chain SY
- 40S ribosomal protein S19
Coloring options: