HL_9C3H_048

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

G(PSU)A(A2M)C(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

9C3H|1|L5|A2M|3760

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_048 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1463

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9C3H|1|L5|G|3757
9C3H|1|L5|PSU|3758
9C3H|1|L5|A|3759
9C3H|1|L5|A2M|3760
9C3H|1|L5|C|3761
9C3H|1|L5|PSU|3762
9C3H|1|L5|A|3763
9C3H|1|L5|PSU|3764
9C3H|1|L5|G|3765
9C3H|1|L5|A|3766
9C3H|1|L5|C|3767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain S4

Transfer RNA; tRNA