HL_9C3H_076

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

9C3H|1|S2|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_076 not in the Motif Atlas

Homologous match to HL_8C3A_197

Geometric discrepancy: 0.3192

The information below is about HL_8C3A_197

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9C3H|1|S2|G|288
9C3H|1|S2|G|289
9C3H|1|S2|U|290
9C3H|1|S2|G|291
9C3H|1|S2|A|292
9C3H|1|S2|C|293
9C3H|1|S2|U|294
9C3H|1|S2|C|295

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

Small ribosomal subunit protein eS6

Chain SL

Small ribosomal subunit protein uS17