HL_9C3H_086

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UG(PSU)(PSU)CAAAG

Length

9 nucleotides

Bulged bases

9C3H|1|S2|G|821

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_086 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.1125

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9C3H|1|S2|U|820
9C3H|1|S2|G|821
9C3H|1|S2|PSU|822
9C3H|1|S2|PSU|823
9C3H|1|S2|C|824
9C3H|1|S2|A|825
9C3H|1|S2|A|826
9C3H|1|S2|A|827
9C3H|1|S2|G|828

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SJ

Small ribosomal subunit protein uS4

Chain SY

Isoform 3 of Small ribosomal subunit protein eS24