HL_9C3H_096

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9C3H|1|S2|U|1300, 9C3H|1|S2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_096 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.1573

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9C3H|1|S2|A|1295
9C3H|1|S2|U|1296
9C3H|1|S2|U|1297
9C3H|1|S2|G|1298
9C3H|1|S2|A|1299
9C3H|1|S2|U|1300
9C3H|1|S2|A|1301
9C3H|1|S2|G|1302
9C3H|1|S2|C|1303
9C3H|1|S2|U|1304

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein uS19

Chain Sf

Small ribosomal subunit protein uS14

Chain Sz

Ubiquitin-40S ribosomal protein S27a