HL_9C6J_008

3D structure

PDB id

9C6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group IIC intron embedded with the TPP riboswitch

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CGAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C6J_008 not in the Motif Atlas

Geometric match to HL_3IGI_009

Geometric discrepancy: 0.0937

The information below is about HL_3IGI_009

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_64036.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

27

Unit IDs

9C6J|1|A|C|368
9C6J|1|A|G|369
9C6J|1|A|A|370
9C6J|1|A|A|371
9C6J|1|A|C|372
9C6J|1|A|G|373

Current chains

Chain A

Group IIC intron embedded with the TPP riboswitch

Nearby chains