HL_9CL9_024

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

9CL9|1|CA|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CL9_024 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.3704

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9CL9|1|CA|U|1629
9CL9|1|CA|A|1630
9CL9|1|CA|G|1631
9CL9|1|CA|A|1632
9CL9|1|CA|G|1633
9CL9|1|CA|A|1634
9CL9|1|CA|A|1635
9CL9|1|CA|U|1636
9CL9|1|CA|A|1637

Current chains

Chain CA

23S rRNA

Nearby chains