HL_9CPA_013

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9CPA|1|2|C|440, 9CPA|1|2|G|441

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_013 not in the Motif Atlas

Geometric match to HL_8P9A_199

Geometric discrepancy: 0.1021

The information below is about HL_8P9A_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.1

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9CPA|1|2|C|431
9CPA|1|2|C|432
9CPA|1|2|U|433
9CPA|1|2|G|434
9CPA|1|2|A|435
9CPA|1|2|G|436
9CPA|1|2|A|437
9CPA|1|2|A|438
9CPA|1|2|A|439
9CPA|1|2|C|440
9CPA|1|2|G|441
9CPA|1|2|G|442

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain I

40S ribosomal protein S6

Chain K

Small ribosomal subunit protein eS8