HL_9CPA_017

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_017 not in the Motif Atlas

Geometric match to HL_8CRE_204

Geometric discrepancy: 0.1712

The information below is about HL_8CRE_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9CPA|1|2|A|559
9CPA|1|2|C|560
9CPA|1|2|U|561
9CPA|1|2|U|562
9CPA|1|2|U|563
9CPA|1|2|A|564
9CPA|1|2|A|565
9CPA|1|2|A|566
9CPA|1|2|U|567
9CPA|1|2|C|568
9CPA|1|2|C|569
9CPA|1|2|U|570
9CPA|1|2|U|571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein S9 (Predicted)

Chain a

40S ribosomal protein S24