HL_9CPA_026

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

9CPA|1|2|U|1057

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_026 not in the Motif Atlas

Geometric match to HL_5J7L_017

Geometric discrepancy: 0.16

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9CPA|1|2|G|1050
9CPA|1|2|A|1051
9CPA|1|2|U|1052
9CPA|1|2|C|1053
9CPA|1|2|A|1054
9CPA|1|2|G|1055
9CPA|1|2|A|1056
9CPA|1|2|U|1057
9CPA|1|2|A|1058
9CPA|1|2|C|1059
9CPA|1|2|C|1060

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

Small ribosomal subunit protein uS11

Chain 1

Transfer RNA; tRNA

Chain A

Eukaryotic translation initiation factor 2 subunit 1