HL_9D89_005

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1018

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9D89|1|D|U|158
9D89|1|D|G|159
9D89|1|D|A|160
9D89|1|D|A|161
9D89|1|D|U|162
9D89|1|D|C|163
9D89|1|D|C|164
9D89|1|D|A|165
9D89|1|D|U|166
9D89|1|D|A|167
9D89|1|D|G|168

Current chains

Chain D

23S rRNA

Nearby chains

Chain w

50S ribosomal protein L28