HL_9D89_012

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9D89|1|D|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1335

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9D89|1|D|A|382
9D89|1|D|C|383
9D89|1|D|A|384
9D89|1|D|C|385
9D89|1|D|G|386
9D89|1|D|U|387
9D89|1|D|G|388
9D89|1|D|G|389
9D89|1|D|U|390
9D89|1|D|A|391
9D89|1|D|U|392

Current chains

Chain D

23S rRNA

Nearby chains

Chain w

50S ribosomal protein L28