HL_9D89_038

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

9D89|1|D|A|1636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_038 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.0608

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9D89|1|D|A|1632
9D89|1|D|G|1633
9D89|1|D|A|1634
9D89|1|D|G|1635
9D89|1|D|A|1636
9D89|1|D|A|1637
9D89|1|D|U|1638

Current chains

Chain D

23S rRNA

Nearby chains