HL_9DOV_021

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9DOV|1|A1|A|913, 9DOV|1|A1|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DOV_021 not in the Motif Atlas

Homologous match to HL_9PN5_021

Geometric discrepancy: 0.0397

The information below is about HL_9PN5_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9DOV|1|A1|G|910
9DOV|1|A1|C|911
9DOV|1|A1|G|912
9DOV|1|A1|A|913
9DOV|1|A1|A|914
9DOV|1|A1|A|915
9DOV|1|A1|G|916
9DOV|1|A1|A|917
9DOV|1|A1|C|918

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain AN

60S ribosomal protein L15-A

Chain Aj

60S ribosomal protein L37-A