HL_9DOV_040
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 9DOV|1|A1|C|1846, 9DOV|1|A1|G|1848, 9DOV|1|A1|A|1850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9DOV_040 not in the Motif Atlas
- Homologous match to HL_9PN5_040
- Geometric discrepancy: 0.0413
- The information below is about HL_9PN5_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28592.5
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9DOV|1|A1|C|1844
9DOV|1|A1|G|1845
9DOV|1|A1|C|1846
9DOV|1|A1|A|1847
9DOV|1|A1|G|1848
9DOV|1|A1|C|1849
9DOV|1|A1|A|1850
9DOV|1|A1|G|1851
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AC
- Large ribosomal subunit protein uL4A
- Chain AP
- 60S ribosomal protein L17-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
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