HL_9DOV_049

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9DOV|1|A1|A|2372, 9DOV|1|A1|A|2373, 9DOV|1|A1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|G|2369
9DOV|1|A1|G|2370
9DOV|1|A1|G|2371
9DOV|1|A1|A|2372
9DOV|1|A1|A|2373
9DOV|1|A1|C|2374
9DOV|1|A1|G|2375
9DOV|1|A1|G|2376
9DOV|1|A1|G|2377
9DOV|1|A1|C|2378

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain Ae

Large ribosomal subunit protein eL32