HL_9DOV_068

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

9DOV|1|A1|A|3243, 9DOV|1|A1|A|3244, 9DOV|1|A1|G|3246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DOV_068 not in the Motif Atlas

Homologous match to HL_9PN5_067

Geometric discrepancy: 0.0924

The information below is about HL_9PN5_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9DOV|1|A1|C|3240
9DOV|1|A1|G|3241
9DOV|1|A1|G|3242
9DOV|1|A1|A|3243
9DOV|1|A1|A|3244
9DOV|1|A1|A|3245
9DOV|1|A1|G|3246
9DOV|1|A1|G|3247

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L16-A