HL_9DOV_075
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 9DOV|1|A4|U|81, 9DOV|1|A4|U|82, 9DOV|1|A4|C|84, 9DOV|1|A4|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9DOV_075 not in the Motif Atlas
- Homologous match to HL_9AXU_072
- Geometric discrepancy: 0.558
- The information below is about HL_9AXU_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68571.2
- Basepair signature
- cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9DOV|1|A4|U|69
9DOV|1|A4|G|70
9DOV|1|A4|A|71
9DOV|1|A4|A|72
9DOV|1|A4|U|73
9DOV|1|A4|U|74
9DOV|1|A4|G|75
9DOV|1|A4|C|76
9DOV|1|A4|A|77
9DOV|1|A4|G|78
9DOV|1|A4|A|79
9DOV|1|A4|A|80
9DOV|1|A4|U|81
9DOV|1|A4|U|82
9DOV|1|A4|C|83
9DOV|1|A4|C|84
9DOV|1|A4|G|85
9DOV|1|A4|U|86
9DOV|1|A4|G|87
9DOV|1|A4|A|88
9DOV|1|A4|A|89
Current chains
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AY
- 60S ribosomal protein L26-A
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
Coloring options: