HL_9DOV_099

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GAUCAGAUAC(OMC)

Length

11 nucleotides

Bulged bases

9DOV|1|B5|U|1004

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|G|997
9DOV|1|B5|A|998
9DOV|1|B5|U|999
9DOV|1|B5|C|1000
9DOV|1|B5|A|1001
9DOV|1|B5|G|1002
9DOV|1|B5|A|1003
9DOV|1|B5|U|1004
9DOV|1|B5|A|1005
9DOV|1|B5|C|1006
9DOV|1|B5|OMC|1007

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BO

40S ribosomal protein S14-A

Chain Ba

Small ribosomal subunit protein eS26B

Chain EC

TSV IRES RNA