HL_9DOV_103
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GAC(XSX)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 9DOV|1|B5|A|1196
- QA status
- Modified nucleotides: XSX
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9DOV_103 not in the Motif Atlas
- Homologous match to HL_9PN5_101
- Geometric discrepancy: 0.091
- The information below is about HL_9PN5_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9DOV|1|B5|G|1188
9DOV|1|B5|A|1189
9DOV|1|B5|C|1190
9DOV|1|B5|XSX|1191
9DOV|1|B5|C|1192
9DOV|1|B5|A|1193
9DOV|1|B5|A|1194
9DOV|1|B5|C|1195
9DOV|1|B5|A|1196
9DOV|1|B5|C|1197
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BS
- 40S ribosomal protein S18-A
- Chain BU
- Small ribosomal subunit protein uS10
- Chain Bd
- Small ribosomal subunit protein uS14A
- Chain EC
- TSV IRES RNA
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