HL_9E1S_060

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

9E1S|1|I|A|2506, 9E1S|1|I|C|2513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E1S_060 not in the Motif Atlas

Homologous match to HL_8B0X_081

Geometric discrepancy: 0.0682

The information below is about HL_8B0X_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.3

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9E1S|1|I|C|2502
9E1S|1|I|U|2503
9E1S|1|I|A|2504
9E1S|1|I|A|2505
9E1S|1|I|A|2506
9E1S|1|I|A|2507
9E1S|1|I|U|2508
9E1S|1|I|G|2509
9E1S|1|I|U|2510
9E1S|1|I|A|2511
9E1S|1|I|A|2512
9E1S|1|I|C|2513
9E1S|1|I|G|2514

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27