HL_9ED0_016

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GA(PSU)CAGAUACC

Length

11 nucleotides

Bulged bases

9ED0|1|2|U|1061

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ED0_016 not in the Motif Atlas

Geometric match to HL_5J7L_017

Geometric discrepancy: 0.0743

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9ED0|1|2|G|1054
9ED0|1|2|A|1055
9ED0|1|2|PSU|1056
9ED0|1|2|C|1057
9ED0|1|2|A|1058
9ED0|1|2|G|1059
9ED0|1|2|A|1060
9ED0|1|2|U|1061
9ED0|1|2|A|1062
9ED0|1|2|C|1063
9ED0|1|2|C|1064

Current chains

Chain 2

rRNA

Nearby chains

Chain O

Small ribosomal subunit protein uS11

Chain a

Small ribosomal subunit protein eS26