HL_9F58_011
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 9F58|1|a|G|218, 9F58|1|a|A|219, 9F58|1|a|G|220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F58_011 not in the Motif Atlas
- Homologous match to HL_8CRE_007
- Geometric discrepancy: 0.0737
- The information below is about HL_8CRE_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
9F58|1|a|G|216
9F58|1|a|U|217
9F58|1|a|G|218
9F58|1|a|A|219
9F58|1|a|G|220
9F58|1|a|A|221
9F58|1|a|A|222
9F58|1|a|U|223
9F58|1|a|C|224
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain 3
- 60S ribosomal protein L4-A
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain J
- 60S ribosomal protein L26-A
Coloring options: