HL_9F58_051

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9F58|1|a|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_051 not in the Motif Atlas

Homologous match to HL_8CRE_048

Geometric discrepancy: 0.0897

The information below is about HL_8CRE_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9F58|1|a|U|2292
9F58|1|a|C|2293
9F58|1|a|U|2294
9F58|1|a|A|2295
9F58|1|a|A|2296
9F58|1|a|U|2297
9F58|1|a|U|2298
9F58|1|a|A|2299
9F58|1|a|G|2300

Current chains

Chain a

25S rRNA

Nearby chains

Chain w

60S ribosomal protein L23-A