HL_9F9S_029
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 9F9S|1|L1|U|879, 9F9S|1|L1|A|883, 9F9S|1|L1|A|884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_029 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.0604
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
9F9S|1|L1|A|876
9F9S|1|L1|C|877
9F9S|1|L1|G|878
9F9S|1|L1|U|879
9F9S|1|L1|G|880
9F9S|1|L1|C|881
9F9S|1|L1|A|882
9F9S|1|L1|A|883
9F9S|1|L1|A|884
9F9S|1|L1|U|885
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain CC
- Uncharacterized protein YEL057C
- Chain LK
- 60S ribosomal protein L17-A
- Chain Lh
- 60S ribosomal protein L37-A
- Chain Lx
- 60S ribosomal protein L3
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