HL_9F9S_105

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

(A2M)CGUGCAAAU

Length

10 nucleotides

Bulged bases

9F9S|1|M1|U|879, 9F9S|1|M1|A|883, 9F9S|1|M1|A|884

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_105 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.0883

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

9F9S|1|M1|A2M|876
9F9S|1|M1|C|877
9F9S|1|M1|G|878
9F9S|1|M1|U|879
9F9S|1|M1|G|880
9F9S|1|M1|C|881
9F9S|1|M1|A|882
9F9S|1|M1|A|883
9F9S|1|M1|A|884
9F9S|1|M1|U|885

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MK

60S ribosomal protein L17-A

Chain Mh

60S ribosomal protein L37-A

Chain Mx

60S ribosomal protein L3