HL_9F9S_134

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9F9S|1|M1|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_134 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0796

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9F9S|1|M1|U|2292
9F9S|1|M1|C|2293
9F9S|1|M1|U|2294
9F9S|1|M1|A|2295
9F9S|1|M1|A|2296
9F9S|1|M1|U|2297
9F9S|1|M1|U|2298
9F9S|1|M1|A|2299
9F9S|1|M1|G|2300

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain Ma

60S ribosomal protein L23-A

Chain R1

Small subunit ribosomal RNA; SSU rRNA