HL_9F9S_172
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAAGGG
- Length
- 6 nucleotides
- Bulged bases
- 9F9S|1|R1|A|369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_172 not in the Motif Atlas
- Homologous match to HL_8C3A_200
- Geometric discrepancy: 0.3335
- The information below is about HL_8C3A_200
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_02837.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9F9S|1|R1|U|368
9F9S|1|R1|A|369
9F9S|1|R1|A|370
9F9S|1|R1|G|371
9F9S|1|R1|G|372
9F9S|1|R1|G|373
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain Rc
- 40S ribosomal protein S2
- Chain Rj
- 40S ribosomal protein S9-A
- Chain Rl
- 40S ribosomal protein S11-A
- Chain Rw
- 40S ribosomal protein S22-A
- Chain Rx
- 40S ribosomal protein S23-A
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