HL_9F9S_173

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9F9S|1|R1|A|400, 9F9S|1|R1|C|402, 9F9S|1|R1|G|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_173 not in the Motif Atlas

Homologous match to HL_8C3A_201

Geometric discrepancy: 0.0831

The information below is about HL_8C3A_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9F9S|1|R1|C|393
9F9S|1|R1|C|394
9F9S|1|R1|U|395
9F9S|1|R1|G|396
9F9S|1|R1|A|397
9F9S|1|R1|G|398
9F9S|1|R1|A|399
9F9S|1|R1|A|400
9F9S|1|R1|A|401
9F9S|1|R1|C|402
9F9S|1|R1|G|403
9F9S|1|R1|G|404

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Re

40S ribosomal protein S4-A

Chain Rg

40S ribosomal protein S6-A

Chain Ri

40S ribosomal protein S8-A

Chain Ry

40S ribosomal protein S24-A