HL_9F9S_185
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 9F9S|1|R1|U|1004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_185 not in the Motif Atlas
- Homologous match to HL_8C3A_213
- Geometric discrepancy: 0.1645
- The information below is about HL_8C3A_213
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9F9S|1|R1|G|997
9F9S|1|R1|A|998
9F9S|1|R1|U|999
9F9S|1|R1|C|1000
9F9S|1|R1|A|1001
9F9S|1|R1|G|1002
9F9S|1|R1|A|1003
9F9S|1|R1|U|1004
9F9S|1|R1|A|1005
9F9S|1|R1|C|1006
9F9S|1|R1|C|1007
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain CM
- mRNA
- Chain DQ
- Transfer RNA; tRNA
- Chain M1
- Large subunit ribosomal RNA; LSU rRNA
- Chain RA
- Small ribosomal subunit protein eS26A
- Chain Ro
- 40S ribosomal protein S14-B
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