HL_9F9S_204

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

9F9S|1|S1|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_204 not in the Motif Atlas

Homologous match to HL_8C3A_197

Geometric discrepancy: 0.0832

The information below is about HL_8C3A_197

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9F9S|1|S1|G|243
9F9S|1|S1|A|244
9F9S|1|S1|U|245
9F9S|1|S1|G|246
9F9S|1|S1|A|247
9F9S|1|S1|U|248
9F9S|1|S1|U|249
9F9S|1|S1|C|250

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Se

40S ribosomal protein S4-A

Chain Sl

40S ribosomal protein S11-A