HL_9F9S_208
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 9F9S|1|S1|C|402, 9F9S|1|S1|G|403
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_208 not in the Motif Atlas
- Homologous match to HL_8C3A_201
- Geometric discrepancy: 0.0851
- The information below is about HL_8C3A_201
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9F9S|1|S1|C|393
9F9S|1|S1|C|394
9F9S|1|S1|U|395
9F9S|1|S1|G|396
9F9S|1|S1|A|397
9F9S|1|S1|G|398
9F9S|1|S1|A|399
9F9S|1|S1|A|400
9F9S|1|S1|A|401
9F9S|1|S1|C|402
9F9S|1|S1|G|403
9F9S|1|S1|G|404
Current chains
- Chain S1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain Se
- 40S ribosomal protein S4-A
- Chain Sg
- 40S ribosomal protein S6-A
- Chain Si
- 40S ribosomal protein S8-A
- Chain Sy
- 40S ribosomal protein S24-A
Coloring options: