HL_9F9S_214

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

9F9S|1|S1|G|765, 9F9S|1|S1|U|767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_214 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.4039

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9F9S|1|S1|U|764
9F9S|1|S1|G|765
9F9S|1|S1|U|766
9F9S|1|S1|U|767
9F9S|1|S1|C|768
9F9S|1|S1|A|769
9F9S|1|S1|A|770
9F9S|1|S1|A|771
9F9S|1|S1|G|772

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Se

40S ribosomal protein S4-A

Chain Sj

40S ribosomal protein S9-A

Chain Sy

40S ribosomal protein S24-A