HL_9F9S_217
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_217 not in the Motif Atlas
- Homologous match to HL_8C3A_211
- Geometric discrepancy: 0.0816
- The information below is about HL_8C3A_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9F9S|1|S1|A|900
9F9S|1|S1|G|901
9F9S|1|S1|G|902
9F9S|1|S1|U|903
9F9S|1|S1|G|904
9F9S|1|S1|A|905
9F9S|1|S1|A|906
9F9S|1|S1|A|907
9F9S|1|S1|U|908
9F9S|1|S1|U|909
Current chains
- Chain S1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain CM
- mRNA
- Chain SA
- Small ribosomal subunit protein eS26A
- Chain Sb
- 40S ribosomal protein S1-A
- Chain Sf
- 40S ribosomal protein S5
- Chain So
- 40S ribosomal protein S14-A
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