HL_9G33_012

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

9G33|1|D3|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G33_012 not in the Motif Atlas

Geometric match to HL_8CRE_196

Geometric discrepancy: 0.2194

The information below is about HL_8CRE_196

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9G33|1|D3|G|243
9G33|1|D3|A|244
9G33|1|D3|U|245
9G33|1|D3|G|246
9G33|1|D3|A|247
9G33|1|D3|U|248
9G33|1|D3|U|249
9G33|1|D3|C|250

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DL

40S ribosomal protein S11-A