HL_9G5E_017
3D structure
- PDB id
- 9G5E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translation-initiation state of human mitochondrial ribosome small subunit (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAGUAGAGUGC
- Length
- 11 nucleotides
- Bulged bases
- 9G5E|1|A|U|1448
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9G5E_017 not in the Motif Atlas
- Homologous match to HL_5J7L_029
- Geometric discrepancy: 0.3415
- The information below is about HL_5J7L_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9G5E|1|A|G|1440
9G5E|1|A|A|1441
9G5E|1|A|G|1442
9G5E|1|A|U|1443
9G5E|1|A|A|1444
9G5E|1|A|G|1445
9G5E|1|A|A|1446
9G5E|1|A|G|1447
9G5E|1|A|U|1448
9G5E|1|A|G|1449
9G5E|1|A|C|1450
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain G
- 28S ribosomal protein S9, mitochondrial
- Chain H
- 28S ribosomal protein S10, mitochondrial
- Chain K
- 28S ribosomal protein S14, mitochondrial
- Chain Z
- 28S ribosomal protein S33, mitochondrial
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