HL_9G6J_034

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

9G6J|1|1|U|1683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_034 not in the Motif Atlas

Homologous match to HL_8CRE_036

Geometric discrepancy: 0.2601

The information below is about HL_8CRE_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9G6J|1|1|G|1676
9G6J|1|1|U|1677
9G6J|1|1|U|1678
9G6J|1|1|A|1679
9G6J|1|1|U|1680
9G6J|1|1|C|1681
9G6J|1|1|U|1682
9G6J|1|1|U|1683
9G6J|1|1|U|1684

Current chains

Chain 1

25S rRNA

Nearby chains

Chain z

Ribosomal protein L19