HL_9G6J_046

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9G6J|1|1|U|2276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_046 not in the Motif Atlas

Homologous match to HL_8CRE_048

Geometric discrepancy: 0.0644

The information below is about HL_8CRE_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9G6J|1|1|U|2270
9G6J|1|1|C|2271
9G6J|1|1|U|2272
9G6J|1|1|A|2273
9G6J|1|1|A|2274
9G6J|1|1|U|2275
9G6J|1|1|U|2276
9G6J|1|1|A|2277
9G6J|1|1|G|2278

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 6

Ribosomal 60S subunit protein L23B

Chain A

Small subunit ribosomal RNA; SSU rRNA