HL_9G7C_011

3D structure

PDB id

9G7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of raiA ncRNA from Clostridium reveals a new RNA 3D fold

Experimental method

ELECTRON MICROSCOPY

Resolution

3.27 Å

Loop

Sequence

UCCGAAUCGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G7C_011 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.3312

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9G7C|3|A|U|118
9G7C|3|A|C|119
9G7C|3|A|C|120
9G7C|3|A|G|121
9G7C|3|A|A|122
9G7C|3|A|A|123
9G7C|3|A|U|124
9G7C|3|A|C|125
9G7C|3|A|G|126
9G7C|3|A|A|127

Current chains

Chain A

raiA (224-MER)

Nearby chains